Healthy Greek Yogurt Blueberry Protein Muffins are soft, satisfying, and full of naturally sweet flavor. These muffins offer the perfect balance between indulgence and nourishment—each bite is packed with juicy blueberries, creamy Greek yogurt, and a generous boost of protein to keep you fueled throughout the day.
Whether you’re grabbing breakfast on the go, prepping snacks for the week, or looking for a post-workout treat, these muffins check every box. They’re lightly sweet, incredibly moist thanks to the yogurt, and just hearty enough to feel like a real meal. No refined sugar, no butter, and no guilt.
Best of all, they’re easy to make with wholesome ingredients and stay tender for days. Kid-approved, freezer-friendly, and completely satisfying.
Ingredients Overview
Each ingredient supports the muffins’ healthy profile while still delivering great taste and texture.
Whole Wheat Flour
This flour adds fiber, nutrients, and a slightly nutty flavor. You can use a mix of whole wheat and all-purpose flour if you prefer a lighter crumb.
Oats
Rolled oats contribute heartiness and structure. They also keep the muffins soft and satisfying. Quick oats work too, but avoid steel-cut oats.
Greek Yogurt
Plain Greek yogurt is the star ingredient—it adds moisture, natural creaminess, and a solid boost of protein without needing oil or butter. Use full-fat or low-fat for the best results.
Protein Powder
Vanilla or unflavored whey or plant-based protein powder enhances the protein content. Be sure to use a high-quality powder that blends well—grainy or overly sweet powders may alter the texture.
Eggs
Eggs provide structure and help the muffins rise. They also add a bit more protein to the mix.
Maple Syrup or Honey
Natural sweeteners like maple syrup or honey give the muffins just the right amount of sweetness without refined sugar. Adjust the quantity depending on your protein powder’s sweetness.
Baking Powder & Baking Soda
These leavening agents give the muffins a light, fluffy rise despite the heavier ingredients.
Cinnamon & Vanilla Extract
Cinnamon adds warmth while vanilla brings depth and sweetness. Together, they round out the flavor beautifully.
Blueberries
Fresh or frozen blueberries add bursts of sweetness and moisture. No need to thaw frozen berries—just toss them in a little flour before mixing to prevent bleeding.
Milk
A splash of milk (dairy or non-dairy) helps thin the batter to the right consistency without making it runny.
Step-by-Step Instructions

1. Preheat and prep the pan:
Preheat oven to 350°F (177°C). Line a standard 12-cup muffin tin with paper liners or lightly grease with oil spray.
2. Mix the dry ingredients:
In a large bowl, whisk together:
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1 cup whole wheat flour
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½ cup rolled oats
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½ cup vanilla protein powder
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1 tsp baking powder
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½ tsp baking soda
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½ tsp cinnamon
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¼ tsp salt
3. Combine the wet ingredients:
In another bowl, whisk until smooth:
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1 cup plain Greek yogurt
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2 large eggs
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⅓ cup maple syrup or honey
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¼ cup milk
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1½ tsp vanilla extract
4. Combine wet and dry:
Pour the wet ingredients into the dry and mix until just combined. Don’t overmix—stop as soon as the flour disappears. The batter will be thick.
5. Fold in the blueberries:
Gently fold in 1 cup of blueberries. If using frozen, toss them in 1 tablespoon of flour before adding to prevent color streaks.
6. Fill the muffin tins:
Divide the batter evenly among the 12 muffin cups. Fill each about ¾ full. Optionally, press a few extra blueberries on top of each muffin for a prettier finish.
7. Bake:
Bake for 18–22 minutes, or until a toothpick inserted in the center comes out clean or with just a few moist crumbs.
8. Cool:
Let the muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely. This helps prevent soggy bottoms.
Tips, Variations & Substitutions
Tips:
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Use room temperature eggs and yogurt for better batter consistency.
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Don’t overmix—this keeps the muffins soft and prevents them from becoming dense.
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Store in an airtight container in the fridge for up to 5 days or freeze for 2 months.
Flavor Variations:
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Add lemon zest for a citrusy kick.
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Swap blueberries for raspberries, diced apples, or chopped strawberries.
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Sprinkle oats or crushed nuts on top before baking for texture.
Substitutions:
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Use almond flour or a 1:1 gluten-free blend in place of wheat flour if needed.
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For dairy-free, use coconut yogurt and almond milk.
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Skip protein powder and increase flour by ¼ cup if desired.
Serving Ideas & Occasions
These muffins are perfect for breakfast on busy mornings, tucked into lunchboxes, or eaten as a pre- or post-workout snack. Their high protein content makes them especially great for a mid-morning energy boost.
Serve them warm with a smear of nut butter, a side of fruit, or simply enjoy one straight from the fridge. They pair beautifully with coffee, smoothies, or a tall glass of milk.
Great for meal prepping on Sundays, they’re a reliable snack you can grab and go throughout the week.
Nutritional & Health Notes
Healthy Greek Yogurt Blueberry Protein Muffins offer a nourishing balance of complex carbs, healthy fats, and lean protein. The Greek yogurt and eggs boost protein without adding heaviness, while oats and whole wheat flour provide lasting energy and fiber.
Using natural sweeteners instead of refined sugar helps keep blood sugar more stable. Blueberries offer antioxidants, and the portion size makes them easy to enjoy without overdoing it.
With about 8–10 grams of protein per muffin (depending on your protein powder), they’re a smart, satisfying choice that supports an active lifestyle.
FAQs
Can I make these without protein powder?
Yes. Omit the protein powder and add ¼ cup extra flour. The muffins will still be delicious and full of natural protein from the yogurt and eggs.
Can I use frozen blueberries?
Absolutely. No need to thaw—just toss them in a tablespoon of flour before folding them in to avoid bleeding color into the batter.
How do I store these muffins?
Store in an airtight container in the fridge for up to 5 days. For longer storage, freeze individually and thaw overnight or reheat in the microwave.
Can I make these gluten-free?
Yes. Use certified gluten-free oats and a 1:1 gluten-free flour blend. Texture may vary slightly, but they’ll still hold together well.
Are these sweet enough?
They’re lightly sweetened to keep them healthy. If you prefer sweeter muffins, add 2–3 tablespoons of coconut sugar or increase the maple syrup slightly.
Can I use flavored yogurt?
Plain Greek yogurt is best to control sweetness and sugar content. If using flavored, reduce added sweetener slightly.
Can I bake these as mini muffins?
Yes. Fill mini muffin tins ¾ full and bake at 350°F for 10–12 minutes. Great for kid-sized snacks or party platters.
Blueberry Protein Muffins Made with Greek Yogurt
Soft, high-protein muffins made with Greek yogurt, blueberries, oats, and whole wheat flour. Naturally sweetened and perfect for healthy breakfasts or snacks.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Total Time: 30 minutes
- Yield: 12 muffins 1x
Ingredients
1 cup whole wheat flour
½ cup rolled oats
½ cup vanilla protein powder
1 tsp baking powder
½ tsp baking soda
½ tsp cinnamon
¼ tsp salt
1 cup plain Greek yogurt
2 large eggs
⅓ cup maple syrup or honey
¼ cup milk
1½ tsp vanilla extract
1 cup blueberries (fresh or frozen)
Instructions
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Preheat oven to 350°F. Line or grease a 12-cup muffin tin.
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In a bowl, whisk flour, oats, protein powder, baking powder, soda, cinnamon, and salt.
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In another bowl, whisk yogurt, eggs, maple syrup, milk, and vanilla.
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Pour wet into dry and stir until just combined.
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Fold in blueberries.
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Divide batter among muffin cups.
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Bake 18–22 minutes until a toothpick comes out clean.
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Cool 5 minutes in tin, then transfer to rack to cool completely.
Notes
Use room temp ingredients for best results. Don’t overmix. Freeze leftovers for easy snacks.